Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TOMM22P5-201ENST00000416399 439 ntBASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 AC004066.1-201ENST00000502488 802 ntBASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 METTL23-205ENST00000588302 925 ntTSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 AL138828.2-201ENST00000615812 383 ntBASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 AC015802.1-201ENST00000588104 1449 ntBASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
CHMP1AQ9HD42 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
CHMP1AQ9HD42 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
CHMP1AQ9HD42 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CHMP1AQ9HD42 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
CHMP1AQ9HD42 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.83□□□□□ -0.35
CHMP1AQ9HD42 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
CHMP1AQ9HD42 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.83□□□□□ -0.35
CHMP1AQ9HD42 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 AC027369.6-201ENST00000525520 931 ntBASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 AC010336.2-201ENST00000564226 506 ntBASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 AC004461.2-201ENST00000629517 803 ntBASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 TUBB3P1-201ENST00000405796 1332 ntBASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 AC027612.1-201ENST00000445234 2395 ntBASIC12.83□□□□□ -0.36
CHMP1AQ9HD42 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 MEX3B-202ENST00000558133 4333 ntBASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 AC104457.1-201ENST00000401024 814 ntBASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms