Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.13□□□□□ -0.31
MMP28Q9H239 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC13.13□□□□□ -0.31
MMP28Q9H239 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
MMP28Q9H239 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.13□□□□□ -0.31
MMP28Q9H239 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC13.13□□□□□ -0.31
MMP28Q9H239 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.13□□□□□ -0.31
MMP28Q9H239 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.13□□□□□ -0.31
MMP28Q9H239 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 FAM86GP-201ENST00000448322 971 ntBASIC13.13□□□□□ -0.31
MMP28Q9H239 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC13.13□□□□□ -0.31
MMP28Q9H239 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.13□□□□□ -0.31
MMP28Q9H239 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC13.13□□□□□ -0.31
MMP28Q9H239 RAB34-224ENST00000636513 888 ntTSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
MMP28Q9H239 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC13.13□□□□□ -0.31
MMP28Q9H239 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
MMP28Q9H239 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC13.13□□□□□ -0.31
MMP28Q9H239 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 AL445209.1-201ENST00000607269 3491 ntBASIC13.12□□□□□ -0.31
MMP28Q9H239 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.12□□□□□ -0.31
MMP28Q9H239 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
MMP28Q9H239 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC13.12□□□□□ -0.31
MMP28Q9H239 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.12□□□□□ -0.31
MMP28Q9H239 AC003101.2-201ENST00000612557 442 ntBASIC13.12□□□□□ -0.31
MMP28Q9H239 MIR6080-201ENST00000617359 66 ntBASIC13.12□□□□□ -0.31
MMP28Q9H239 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
MMP28Q9H239 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.12□□□□□ -0.31
MMP28Q9H239 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.12□□□□□ -0.31
MMP28Q9H239 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.12□□□□□ -0.31
MMP28Q9H239 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms