Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MIR4254-201ENST00000581063 76 ntBASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
SMC1BQ8NDV3 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 PIFO-201ENST00000369737 746 ntTSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 ASS1P2-201ENST00000439895 1223 ntBASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMC1BQ8NDV3 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 AC098657.1-201ENST00000416270 1135 ntBASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 GPX3-202ENST00000517973 612 ntTSL 3 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 NEK4P3-201ENST00000604859 544 ntBASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMC1BQ8NDV3 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms