Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CSF3R-204ENST00000373104 2953 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PLSCR1-201ENST00000342435 2233 ntAPPRIS P2 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 APOL3-205ENST00000397293 2214 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 GRM8-201ENST00000339582 4057 ntAPPRIS P3 TSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 VPS52-218ENST00000482399 3338 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 TNS2-204ENST00000546602 4429 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 AC091078.1-202ENST00000543286 2012 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 ITIH5-201ENST00000397145 3132 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 C14orf119-201ENST00000319074 3660 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 SRRM5-201ENST00000417606 2381 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 GXYLT1P6-201ENST00000456472 1187 ntBASIC9.11□□□□□ -0.95
LINC00643Q86TS7 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 AC139887.4-201ENST00000607877 719 ntBASIC9.11□□□□□ -0.95
LINC00643Q86TS7 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 STRN-201ENST00000263918 8168 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 HK2P1-201ENST00000447818 2737 ntBASIC9.11□□□□□ -0.95
LINC00643Q86TS7 C14orf159-219ENST00000521077 2719 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 KCNA4-201ENST00000328224 4172 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 RAP1GAP2-201ENST00000254695 6661 ntAPPRIS P4 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PKN2-203ENST00000370521 6121 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 SPATS2L-205ENST00000409151 1979 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 ZNF25-201ENST00000302609 4139 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PLEKHG4-204ENST00000427155 4455 ntAPPRIS P3 TSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 DHX30-207ENST00000457607 3748 ntTSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 CASZ1-201ENST00000344008 4405 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 NR1I2-202ENST00000393716 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 ERN2-201ENST00000256797 3549 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 SETDB2-203ENST00000354234 6139 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 TMEM25-208ENST00000524725 2630 ntAPPRIS ALT2 TSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 C9orf3-203ENST00000375315 3136 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 DAAM2-208ENST00000538976 6247 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 MSNP1-201ENST00000511640 1732 ntBASIC9.11□□□□□ -0.95
LINC00643Q86TS7 NLRP7-201ENST00000328092 3299 ntAPPRIS P3 TSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 KCNH1-209ENST00000639952 8075 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 AC106820.4-201ENST00000561847 5616 ntBASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PCDHAC1-201ENST00000253807 5299 ntAPPRIS P2 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 C9orf170-201ENST00000623052 3239 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 BHMT-201ENST00000274353 2502 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 RNF217-210ENST00000521654 11325 ntAPPRIS P2 TSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 NLRP7-206ENST00000588756 3826 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 TGFBI-201ENST00000442011 2804 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 SMCR5-201ENST00000543475 2844 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AC002350.2-201ENST00000623894 1828 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 EIF3A-203ENST00000541549 4495 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 FAM102A-203ENST00000373095 4144 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 CORO7-PAM16-202ENST00000572467 3284 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 ORMDL2-201ENST00000243045 2141 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 LRFN5-201ENST00000298119 3723 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 RNF220-202ENST00000355387 3099 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 CHMP2B-201ENST00000263780 2557 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AQP7-205ENST00000379507 2879 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 CD99-202ENST00000381180 530 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC9.1□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms