Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 RPL35P9-201ENST00000446059 350 ntBASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 AC226150.1-201ENST00000544259 466 ntBASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 KRT8P2-201ENST00000556193 944 ntBASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 SIGLEC22P-201ENST00000599104 714 ntBASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 AC006483.2-201ENST00000609813 515 ntBASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 CR392039.1-201ENST00000623217 204 ntBASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 HLA-DPA2-205ENST00000433582 733 ntBASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 RNA5SP406-201ENST00000516106 112 ntBASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 MBP-238ENST00000580402 915 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC88AQ3V6T2 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AL451000.1-201ENST00000451300 1186 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 RN7SL530P-201ENST00000485097 298 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 RPL18AP8-201ENST00000486071 528 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC095040.1-201ENST00000513286 675 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC068831.5-201ENST00000557387 328 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 DUT-207ENST00000559416 635 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC006504.5-208ENST00000588784 2401 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms