Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC12.7□□□□□ -0.38
ABCA4P78363 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 NAT9-220ENST00000582870 896 ntTSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC12.7□□□□□ -0.38
ABCA4P78363 AC009884.2-201ENST00000603110 324 ntBASIC12.7□□□□□ -0.38
ABCA4P78363 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 ST20-AS1-201ENST00000560255 4223 ntBASIC12.7□□□□□ -0.38
ABCA4P78363 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 AC007292.2-201ENST00000593524 1812 ntBASIC12.7□□□□□ -0.38
ABCA4P78363 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC12.7□□□□□ -0.38
ABCA4P78363 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.69□□□□□ -0.38
ABCA4P78363 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 RAN-210ENST00000541630 1475 ntTSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC12.69□□□□□ -0.38
ABCA4P78363 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 CD164-210ENST00000512821 964 ntTSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 TPM1-223ENST00000560445 485 ntTSL 3 BASIC12.69□□□□□ -0.38
ABCA4P78363 AL031713.1-201ENST00000564813 661 ntBASIC12.69□□□□□ -0.38
ABCA4P78363 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC12.69□□□□□ -0.38
ABCA4P78363 AC005632.3-201ENST00000605544 308 ntBASIC12.69□□□□□ -0.38
ABCA4P78363 AC087045.2-201ENST00000606279 1003 ntBASIC12.69□□□□□ -0.38
ABCA4P78363 AC007881.3-201ENST00000608897 607 ntBASIC12.69□□□□□ -0.38
ABCA4P78363 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.69□□□□□ -0.38
ABCA4P78363 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
ABCA4P78363 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
ABCA4P78363 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
ABCA4P78363 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
ABCA4P78363 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.68□□□□□ -0.38
ABCA4P78363 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms