Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
SUMO3P55854 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SUMO3P55854 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SUMO3P55854 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
SUMO3P55854 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SUMO3P55854 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.33□□□□□ -0.27
SUMO3P55854 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.33□□□□□ -0.27
SUMO3P55854 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SUMO3P55854 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SUMO3P55854 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.33□□□□□ -0.28
SUMO3P55854 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.33□□□□□ -0.28
SUMO3P55854 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.33□□□□□ -0.28
SUMO3P55854 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.33□□□□□ -0.28
SUMO3P55854 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.33□□□□□ -0.28
SUMO3P55854 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
SUMO3P55854 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.33□□□□□ -0.28
SUMO3P55854 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.33□□□□□ -0.28
SUMO3P55854 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.33□□□□□ -0.28
SUMO3P55854 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.33□□□□□ -0.28
SUMO3P55854 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.33□□□□□ -0.28
SUMO3P55854 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.33□□□□□ -0.28
SUMO3P55854 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 AC064801.2-201ENST00000625052 1303 ntBASIC13.33□□□□□ -0.28
SUMO3P55854 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
SUMO3P55854 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.33□□□□□ -0.28
SUMO3P55854 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.33□□□□□ -0.28
SUMO3P55854 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.33□□□□□ -0.28
SUMO3P55854 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
SUMO3P55854 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SUMO3P55854 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.32□□□□□ -0.28
SUMO3P55854 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SUMO3P55854 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.32□□□□□ -0.28
SUMO3P55854 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 AC005089.1-201ENST00000619486 2241 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.32□□□□□ -0.28
SUMO3P55854 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.32□□□□□ -0.28
SUMO3P55854 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SUMO3P55854 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.32□□□□□ -0.28
SUMO3P55854 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.32□□□□□ -0.28
SUMO3P55854 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SUMO3P55854 BTBD6P1-201ENST00000412176 1267 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.32□□□□□ -0.28
SUMO3P55854 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SUMO3P55854 AL157407.1-201ENST00000435784 904 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.32□□□□□ -0.28
SUMO3P55854 AL645933.1-201ENST00000440087 609 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.32□□□□□ -0.28
SUMO3P55854 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.32□□□□□ -0.28
SUMO3P55854 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.32□□□□□ -0.28
SUMO3P55854 TUBB8P8-201ENST00000458717 1058 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SUMO3P55854 FAM86HP-204ENST00000513466 959 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.32□□□□□ -0.28
SUMO3P55854 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
SUMO3P55854 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 AL023803.2-201ENST00000620080 638 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.32□□□□□ -0.28
SUMO3P55854 AL162426.1-201ENST00000624141 743 ntBASIC13.32□□□□□ -0.28
SUMO3P55854 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.32□□□□□ -0.28
SUMO3P55854 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SUMO3P55854 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms