Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.25■□□□□ 0.35
BRCA1P38398 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
BRCA1P38398 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC17.25■□□□□ 0.35
BRCA1P38398 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.25■□□□□ 0.35
BRCA1P38398 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC17.25■□□□□ 0.35
BRCA1P38398 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
BRCA1P38398 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 AIG1-203ENST00000367596 559 ntTSL 2 BASIC17.24■□□□□ 0.35
BRCA1P38398 KRT8P6-201ENST00000399259 1207 ntBASIC17.24■□□□□ 0.35
BRCA1P38398 PGK1P2-201ENST00000431702 1214 ntBASIC17.24■□□□□ 0.35
BRCA1P38398 MBP-230ENST00000528160 584 ntTSL 5 BASIC17.24■□□□□ 0.35
BRCA1P38398 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC17.24■□□□□ 0.35
BRCA1P38398 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC17.24■□□□□ 0.35
BRCA1P38398 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
BRCA1P38398 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
BRCA1P38398 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 DUT-208ENST00000559540 1441 ntTSL 2 BASIC17.24■□□□□ 0.35
BRCA1P38398 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
BRCA1P38398 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
BRCA1P38398 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.24■□□□□ 0.35
BRCA1P38398 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.24■□□□□ 0.35
BRCA1P38398 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
BRCA1P38398 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
BRCA1P38398 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
BRCA1P38398 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC17.24■□□□□ 0.35
BRCA1P38398 FTH1P18-201ENST00000412071 549 ntBASIC17.24■□□□□ 0.35
BRCA1P38398 POLR2LP1-206ENST00000444785 187 ntBASIC17.24■□□□□ 0.35
BRCA1P38398 RNA5SP420-201ENST00000516997 137 ntBASIC17.24■□□□□ 0.35
BRCA1P38398 BAK1P2-201ENST00000532665 631 ntBASIC17.24■□□□□ 0.35
BRCA1P38398 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
BRCA1P38398 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.24■□□□□ 0.35
BRCA1P38398 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BRCA1P38398 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
BRCA1P38398 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC17.23■□□□□ 0.35
BRCA1P38398 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
BRCA1P38398 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
BRCA1P38398 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC17.23■□□□□ 0.35
BRCA1P38398 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC17.23■□□□□ 0.35
BRCA1P38398 AC008494.1-201ENST00000497612 796 ntBASIC17.23■□□□□ 0.35
BRCA1P38398 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC17.23■□□□□ 0.35
BRCA1P38398 GRAMD4P6-201ENST00000556999 244 ntBASIC17.23■□□□□ 0.35
BRCA1P38398 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
BRCA1P38398 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
BRCA1P38398 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.23■□□□□ 0.35
BRCA1P38398 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.23■□□□□ 0.35
BRCA1P38398 AL365203.3-201ENST00000609742 2057 ntBASIC17.23■□□□□ 0.35
BRCA1P38398 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
BRCA1P38398 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.23■□□□□ 0.35
BRCA1P38398 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC17.23■□□□□ 0.35
BRCA1P38398 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRCA1P38398 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC17.22■□□□□ 0.35
BRCA1P38398 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC17.22■□□□□ 0.35
BRCA1P38398 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC17.22■□□□□ 0.35
BRCA1P38398 AC007679.1-201ENST00000458609 502 ntBASIC17.22■□□□□ 0.35
BRCA1P38398 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC17.22■□□□□ 0.35
BRCA1P38398 PRORSD1P-202ENST00000563365 2154 ntBASIC17.22■□□□□ 0.35
BRCA1P38398 AC132825.4-202ENST00000578792 434 ntBASIC17.22■□□□□ 0.35
BRCA1P38398 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC17.22■□□□□ 0.35
BRCA1P38398 OR3A1-202ENST00000615105 966 ntBASIC17.22■□□□□ 0.35
BRCA1P38398 AC026120.2-201ENST00000617239 309 ntBASIC17.22■□□□□ 0.35
BRCA1P38398 AC009041.4-201ENST00000620075 638 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms