Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 HNRNPA1P41-201ENST00000397777 928 ntBASIC17.11■□□□□ 0.33
ERCC3P19447 VDAC1P1-201ENST00000439229 848 ntBASIC17.11■□□□□ 0.33
ERCC3P19447 FTLP1-201ENST00000449155 526 ntBASIC17.11■□□□□ 0.33
ERCC3P19447 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC17.11■□□□□ 0.33
ERCC3P19447 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
ERCC3P19447 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.11■□□□□ 0.33
ERCC3P19447 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 AL353726.2-201ENST00000623259 884 ntBASIC17.11■□□□□ 0.33
ERCC3P19447 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
ERCC3P19447 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ERCC3P19447 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ERCC3P19447 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
ERCC3P19447 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.11■□□□□ 0.33
ERCC3P19447 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.11■□□□□ 0.33
ERCC3P19447 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.11■□□□□ 0.33
ERCC3P19447 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 AC244394.1-201ENST00000435000 1665 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.1■□□□□ 0.33
ERCC3P19447 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.1■□□□□ 0.33
ERCC3P19447 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 AGAP7P-201ENST00000582299 2062 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 AGAP14-201ENST00000624701 2060 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 RN7SKP214-201ENST00000364208 315 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ERCC3P19447 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC17.1■□□□□ 0.33
ERCC3P19447 AC006335.1-201ENST00000445200 547 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC17.1■□□□□ 0.33
ERCC3P19447 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 HLA-J-204ENST00000495278 958 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.1■□□□□ 0.33
ERCC3P19447 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.1■□□□□ 0.33
ERCC3P19447 AC103988.2-201ENST00000561804 725 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.1■□□□□ 0.33
ERCC3P19447 CENPX-208ENST00000584347 799 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 AC008805.1-201ENST00000590892 364 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 AC020922.3-201ENST00000595064 547 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 AL132994.2-201ENST00000603120 687 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.1■□□□□ 0.33
ERCC3P19447 AL353770.1-201ENST00000614915 403 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.1■□□□□ 0.33
ERCC3P19447 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ERCC3P19447 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 AC006058.4-201ENST00000624016 1670 ntBASIC17.1■□□□□ 0.33
ERCC3P19447 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC3P19447 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC3P19447 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC3P19447 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
ERCC3P19447 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC3P19447 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms