Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
TPM1P09493 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TPM1P09493 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TPM1P09493 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC16.37■□□□□ 0.21
TPM1P09493 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TPM1P09493 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
TPM1P09493 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.36■□□□□ 0.21
TPM1P09493 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TPM1P09493 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.36■□□□□ 0.21
TPM1P09493 MEIS3P1-201ENST00000495167 958 ntBASIC16.36■□□□□ 0.21
TPM1P09493 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.36■□□□□ 0.21
TPM1P09493 AC069120.2-201ENST00000524091 540 ntBASIC16.36■□□□□ 0.21
TPM1P09493 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TPM1P09493 AC092337.1-201ENST00000568699 1129 ntBASIC16.36■□□□□ 0.21
TPM1P09493 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TPM1P09493 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 AC010327.4-202ENST00000591484 748 ntBASIC16.36■□□□□ 0.21
TPM1P09493 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 AL158212.4-201ENST00000624062 1286 ntBASIC16.36■□□□□ 0.21
TPM1P09493 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.36■□□□□ 0.21
TPM1P09493 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
TPM1P09493 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.36■□□□□ 0.21
TPM1P09493 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TPM1P09493 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC16.35■□□□□ 0.21
TPM1P09493 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TPM1P09493 KRT8P24-201ENST00000560290 1559 ntBASIC16.35■□□□□ 0.21
TPM1P09493 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 AL138799.1-201ENST00000448213 1675 ntBASIC16.35■□□□□ 0.21
TPM1P09493 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
TPM1P09493 AC254562.1-201ENST00000417586 456 ntBASIC16.35■□□□□ 0.21
TPM1P09493 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
TPM1P09493 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.35■□□□□ 0.21
TPM1P09493 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 AC125807.1-201ENST00000483097 614 ntBASIC16.35■□□□□ 0.21
TPM1P09493 TMEM198B-204ENST00000484016 896 ntBASIC16.35■□□□□ 0.21
TPM1P09493 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.35■□□□□ 0.21
TPM1P09493 AC027369.6-201ENST00000525520 931 ntBASIC16.35■□□□□ 0.21
TPM1P09493 ZNF890P-202ENST00000530367 1156 ntBASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms