Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 NHP2P1-201ENST00000335274 462 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC13.32□□□□□ -0.28
SPTA1P02549 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 RPL35P9-201ENST00000446059 350 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 AC093909.3-201ENST00000504783 336 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SPTA1P02549 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 AL672207.1-201ENST00000328462 1570 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SPTA1P02549 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 AF274858.1-201ENST00000406288 372 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 AC023141.7-201ENST00000430646 407 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 AC108724.1-201ENST00000481669 352 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC13.32□□□□□ -0.28
SPTA1P02549 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 CYP4F23P-201ENST00000593402 1579 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 AC011462.4-201ENST00000616866 449 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 AC105250.1-201ENST00000509378 2057 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 AC026471.1-201ENST00000564629 3026 ntBASIC13.32□□□□□ -0.28
SPTA1P02549 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
SPTA1P02549 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SPTA1P02549 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.31□□□□□ -0.28
SPTA1P02549 XBP1P1-201ENST00000436573 652 ntBASIC13.31□□□□□ -0.28
SPTA1P02549 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC13.31□□□□□ -0.28
SPTA1P02549 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC13.31□□□□□ -0.28
SPTA1P02549 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC13.31□□□□□ -0.28
SPTA1P02549 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC13.31□□□□□ -0.28
SPTA1P02549 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 AC027601.3-201ENST00000622907 509 ntBASIC13.31□□□□□ -0.28
SPTA1P02549 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SPTA1P02549 AC012508.2-201ENST00000567613 1472 ntBASIC13.31□□□□□ -0.28
SPTA1P02549 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SPTA1P02549 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.31□□□□□ -0.28
SPTA1P02549 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms