Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 BRWD1P1-201ENST00000401091 371 ntBASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 BTBD6P1-201ENST00000412176 1267 ntBASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 GOLGA2P4-201ENST00000441462 777 ntBASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 HIST2H2BB-201ENST00000449108 381 ntBASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 GCOM2-201ENST00000509133 1104 ntBASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 AL358472.3-201ENST00000608147 415 ntBASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM39Q9HCM9 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM39Q9HCM9 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 MIR1908-201ENST00000410394 80 ntBASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AC100850.1-201ENST00000506768 649 ntBASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 FAM86HP-204ENST00000513466 959 ntBASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 RIT1-205ENST00000539040 919 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AC008825.2-201ENST00000603374 718 ntBASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms