Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 TCAM1P-207ENST00000485295 1537 ntBASIC15.29■□□□□ 0.04
PCDH9Q9HC56 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 MRPL37P1-201ENST00000592451 1337 ntBASIC15.29■□□□□ 0.04
PCDH9Q9HC56 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC005229.1-201ENST00000392885 409 ntBASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC005034.1-201ENST00000426657 489 ntBASIC15.29■□□□□ 0.04
PCDH9Q9HC56 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC106760.1-201ENST00000508690 800 ntBASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 BTNL10-201ENST00000595971 695 ntBASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC233724.13-201ENST00000598383 410 ntBASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC145423.3-201ENST00000615987 467 ntBASIC15.29■□□□□ 0.04
PCDH9Q9HC56 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDH9Q9HC56 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 AL138725.1-201ENST00000407347 1314 ntBASIC15.28■□□□□ 0.04
PCDH9Q9HC56 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 BCRP2-202ENST00000447763 634 ntBASIC15.28■□□□□ 0.04
PCDH9Q9HC56 BCRP6-201ENST00000510112 632 ntBASIC15.28■□□□□ 0.04
PCDH9Q9HC56 BCRP7-201ENST00000511549 544 ntBASIC15.28■□□□□ 0.04
PCDH9Q9HC56 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 AL022328.1-201ENST00000610050 478 ntBASIC15.28■□□□□ 0.04
PCDH9Q9HC56 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PCDH9Q9HC56 KRT8P24-201ENST00000560290 1559 ntBASIC15.28■□□□□ 0.04
PCDH9Q9HC56 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.04
PCDH9Q9HC56 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms