Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 TMBIM7P-203ENST00000641617 1718 ntBASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 SOD2-202ENST00000367054 815 ntTSL 2 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 BANF1P3-201ENST00000412556 261 ntBASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 AC079112.1-201ENST00000454972 939 ntBASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 AC130709.1-201ENST00000484779 1212 ntBASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 AC093752.3-201ENST00000567343 901 ntBASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
NPAS3Q8IXF0 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC15.21■□□□□ 0.02
NPAS3Q8IXF0 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NPAS3Q8IXF0 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NPAS3Q8IXF0 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
NPAS3Q8IXF0 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.21■□□□□ 0.02
NPAS3Q8IXF0 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
NPAS3Q8IXF0 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
NPAS3Q8IXF0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AHCYP4-201ENST00000419201 1315 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 KRT18P9-201ENST00000604826 1300 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AC067930.6-201ENST00000623257 4947 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 OR2R1P-201ENST00000441404 914 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AC114501.1-201ENST00000445949 172 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 RPSAP15-201ENST00000448168 861 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AC003686.1-201ENST00000550956 1034 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 MIR4522-201ENST00000584932 87 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 SIGLEC18P-201ENST00000602271 909 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 HLA-C-210ENST00000640219 976 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 KRT8P28-201ENST00000433288 1390 ntBASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPAS3Q8IXF0 AL590440.2-201ENST00000641973 1595 ntBASIC15.19■□□□□ 0.02
NPAS3Q8IXF0 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NPAS3Q8IXF0 MRPL37P1-201ENST00000592451 1337 ntBASIC15.19■□□□□ 0.02
NPAS3Q8IXF0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms