Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
HSPG2P98160 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 BLK-205ENST00000529894 2017 ntTSL 5 BASIC8.77□□□□□ -1.01
HSPG2P98160 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC8.77□□□□□ -1.01
HSPG2P98160 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC8.77□□□□□ -1.01
HSPG2P98160 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
HSPG2P98160 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC8.77□□□□□ -1.01
HSPG2P98160 RPL10-203ENST00000406022 748 ntTSL 3 BASIC8.77□□□□□ -1.01
HSPG2P98160 RN7SKP212-201ENST00000410851 328 ntBASIC8.77□□□□□ -1.01
HSPG2P98160 AC093106.1-201ENST00000437271 352 ntBASIC8.77□□□□□ -1.01
HSPG2P98160 PSME2P2-201ENST00000453033 700 ntBASIC8.77□□□□□ -1.01
HSPG2P98160 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC8.77□□□□□ -1.01
HSPG2P98160 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC8.77□□□□□ -1.01
HSPG2P98160 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC8.77□□□□□ -1.01
HSPG2P98160 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
HSPG2P98160 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
HSPG2P98160 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 GOLGA8UP-201ENST00000527159 1755 ntBASIC8.76□□□□□ -1.01
HSPG2P98160 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
HSPG2P98160 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
HSPG2P98160 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 ABCD1P3-201ENST00000562927 605 ntBASIC8.76□□□□□ -1.01
HSPG2P98160 NAT9-204ENST00000578822 839 ntTSL 3 BASIC8.76□□□□□ -1.01
HSPG2P98160 AC090616.6-202ENST00000583601 1088 ntBASIC8.76□□□□□ -1.01
HSPG2P98160 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC8.76□□□□□ -1.01
HSPG2P98160 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
HSPG2P98160 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 DNM1P46-202ENST00000415963 882 ntBASIC8.76□□□□□ -1.01
HSPG2P98160 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC8.76□□□□□ -1.01
HSPG2P98160 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC8.76□□□□□ -1.01
HSPG2P98160 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 AC239600.1-201ENST00000603201 462 ntBASIC8.76□□□□□ -1.01
HSPG2P98160 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
HSPG2P98160 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 SKA2-205ENST00000580541 689 ntTSL 3 BASIC8.76□□□□□ -1.01
HSPG2P98160 AC139100.2-201ENST00000616901 662 ntBASIC8.76□□□□□ -1.01
HSPG2P98160 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC8.76□□□□□ -1.01
HSPG2P98160 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC8.76□□□□□ -1.01
HSPG2P98160 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
HSPG2P98160 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 RPL5P21-201ENST00000404620 815 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC8.75□□□□□ -1.01
HSPG2P98160 AL049840.2-201ENST00000602722 535 ntBASIC8.75□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms