Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 MTHFR-210ENST00000641407 2387 ntBASIC13.7□□□□□ -0.22
RNF4P78317 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.7□□□□□ -0.22
RNF4P78317 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 POM121L10P-201ENST00000436994 1285 ntBASIC13.7□□□□□ -0.22
RNF4P78317 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 AL035414.1-201ENST00000451327 857 ntBASIC13.7□□□□□ -0.22
RNF4P78317 AC104306.2-201ENST00000451877 341 ntBASIC13.7□□□□□ -0.22
RNF4P78317 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.7□□□□□ -0.22
RNF4P78317 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.7□□□□□ -0.22
RNF4P78317 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
RNF4P78317 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.7□□□□□ -0.22
RNF4P78317 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.7□□□□□ -0.22
RNF4P78317 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 AC009955.4-201ENST00000597192 544 ntBASIC13.7□□□□□ -0.22
RNF4P78317 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.7□□□□□ -0.22
RNF4P78317 AC027601.3-201ENST00000622907 509 ntBASIC13.7□□□□□ -0.22
RNF4P78317 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.69□□□□□ -0.22
RNF4P78317 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
RNF4P78317 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.69□□□□□ -0.22
RNF4P78317 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.69□□□□□ -0.22
RNF4P78317 CICP12-201ENST00000455801 843 ntBASIC13.69□□□□□ -0.22
RNF4P78317 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.69□□□□□ -0.22
RNF4P78317 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13.69□□□□□ -0.22
RNF4P78317 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
RNF4P78317 AC100827.2-201ENST00000563214 1194 ntBASIC13.69□□□□□ -0.22
RNF4P78317 AC132192.2-201ENST00000596206 1147 ntBASIC13.69□□□□□ -0.22
RNF4P78317 AL118558.3-201ENST00000607414 1079 ntBASIC13.69□□□□□ -0.22
RNF4P78317 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 AL008638.5-201ENST00000623814 1298 ntBASIC13.69□□□□□ -0.22
RNF4P78317 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
RNF4P78317 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
RNF4P78317 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.69□□□□□ -0.22
RNF4P78317 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
RNF4P78317 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RNF4P78317 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
RNF4P78317 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.69□□□□□ -0.22
RNF4P78317 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms