Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
AP3S2P59780 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
AP3S2P59780 BMF-207ENST00000559701 630 ntTSL 3 BASIC12.75□□□□□ -0.37
AP3S2P59780 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.75□□□□□ -0.37
AP3S2P59780 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
AP3S2P59780 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC12.75□□□□□ -0.37
AP3S2P59780 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
AP3S2P59780 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
AP3S2P59780 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
AP3S2P59780 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
AP3S2P59780 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
AP3S2P59780 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
AP3S2P59780 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
AP3S2P59780 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
AP3S2P59780 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
AP3S2P59780 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
AP3S2P59780 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
AP3S2P59780 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
AP3S2P59780 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
AP3S2P59780 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
AP3S2P59780 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC12.75□□□□□ -0.37
AP3S2P59780 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
AP3S2P59780 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
AP3S2P59780 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 KRT8P35-201ENST00000483942 1338 ntBASIC12.74□□□□□ -0.37
AP3S2P59780 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC12.74□□□□□ -0.37
AP3S2P59780 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 IGHV3-62-201ENST00000520057 340 ntBASIC12.74□□□□□ -0.37
AP3S2P59780 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC12.74□□□□□ -0.37
AP3S2P59780 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 KRT8P23-201ENST00000560090 1207 ntBASIC12.74□□□□□ -0.37
AP3S2P59780 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.74□□□□□ -0.37
AP3S2P59780 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
AP3S2P59780 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC12.74□□□□□ -0.37
AP3S2P59780 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 RNF165-202ENST00000543885 4852 ntTSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC12.74□□□□□ -0.37
AP3S2P59780 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AP3S2P59780 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC12.74□□□□□ -0.37
AP3S2P59780 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
AP3S2P59780 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC12.73□□□□□ -0.37
AP3S2P59780 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
AP3S2P59780 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AP3S2P59780 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AP3S2P59780 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.73□□□□□ -0.37
AP3S2P59780 AP3S2-216ENST00000617003 1561 ntBASIC12.73□□□□□ -0.37
AP3S2P59780 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AP3S2P59780 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC12.73□□□□□ -0.37
AP3S2P59780 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.73□□□□□ -0.37
AP3S2P59780 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.73□□□□□ -0.37
AP3S2P59780 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
AP3S2P59780 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
AP3S2P59780 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.73□□□□□ -0.37
AP3S2P59780 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms