Protein–RNA interactions for Protein: P49450

CENPA, Histone H3-like centromeric protein A, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPAP49450 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CENPAP49450 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.54□□□□□ -0.24
CENPAP49450 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CENPAP49450 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CENPAP49450 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CENPAP49450 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CENPAP49450 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CENPAP49450 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CENPAP49450 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CENPAP49450 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CENPAP49450 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.54□□□□□ -0.24
CENPAP49450 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.54□□□□□ -0.24
CENPAP49450 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.54□□□□□ -0.24
CENPAP49450 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.53□□□□□ -0.24
CENPAP49450 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.53□□□□□ -0.24
CENPAP49450 PCDHA5-203ENST00000614258 4248 ntBASIC13.53□□□□□ -0.24
CENPAP49450 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC13.53□□□□□ -0.24
CENPAP49450 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 PTPRVP-205ENST00000641549 5067 ntBASIC13.53□□□□□ -0.24
CENPAP49450 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CENPAP49450 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
CENPAP49450 TPT1P11-201ENST00000458482 498 ntBASIC13.53□□□□□ -0.24
CENPAP49450 VDAC1P7-201ENST00000462417 847 ntBASIC13.53□□□□□ -0.24
CENPAP49450 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 AC004890.2-204ENST00000481968 304 ntBASIC13.53□□□□□ -0.24
CENPAP49450 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.53□□□□□ -0.24
CENPAP49450 RARRES2P5-201ENST00000564013 466 ntBASIC13.53□□□□□ -0.24
CENPAP49450 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 AC107373.2-201ENST00000607735 490 ntBASIC13.53□□□□□ -0.24
CENPAP49450 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
CENPAP49450 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.53□□□□□ -0.24
CENPAP49450 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 AC093525.8-201ENST00000624099 1342 ntBASIC13.53□□□□□ -0.24
CENPAP49450 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CENPAP49450 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 AC018665.1-201ENST00000622927 1362 ntBASIC13.53□□□□□ -0.24
CENPAP49450 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.53□□□□□ -0.24
CENPAP49450 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
CENPAP49450 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CENPAP49450 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CENPAP49450 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.52□□□□□ -0.24
CENPAP49450 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
CENPAP49450 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
CENPAP49450 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CENPAP49450 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC13.52□□□□□ -0.24
CENPAP49450 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CENPAP49450 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
CENPAP49450 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CENPAP49450 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.52□□□□□ -0.25
CENPAP49450 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CENPAP49450 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.52□□□□□ -0.25
CENPAP49450 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CENPAP49450 AC104596.2-201ENST00000512793 793 ntBASIC13.52□□□□□ -0.25
CENPAP49450 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.52□□□□□ -0.25
CENPAP49450 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.52□□□□□ -0.25
CENPAP49450 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms