Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC16.02■□□□□ 0.15
HTTP42858 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC16.02■□□□□ 0.15
HTTP42858 GALP-202ENST00000440823 889 ntTSL 5 BASIC16.02■□□□□ 0.15
HTTP42858 B9D1-206ENST00000461069 923 ntTSL 2 BASIC16.02■□□□□ 0.15
HTTP42858 PRSS3P1-201ENST00000503996 742 ntBASIC16.02■□□□□ 0.15
HTTP42858 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.02■□□□□ 0.15
HTTP42858 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC16.02■□□□□ 0.15
HTTP42858 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.02■□□□□ 0.15
HTTP42858 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HTTP42858 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.02■□□□□ 0.15
HTTP42858 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.01■□□□□ 0.15
HTTP42858 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC16.01■□□□□ 0.15
HTTP42858 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC16.01■□□□□ 0.15
HTTP42858 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC16.01■□□□□ 0.15
HTTP42858 AP000244.1-201ENST00000424582 201 ntBASIC16.01■□□□□ 0.15
HTTP42858 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC16.01■□□□□ 0.15
HTTP42858 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC16.01■□□□□ 0.15
HTTP42858 AL133467.4-201ENST00000602953 725 ntBASIC16.01■□□□□ 0.15
HTTP42858 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC16.01■□□□□ 0.15
HTTP42858 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.01■□□□□ 0.15
HTTP42858 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.01■□□□□ 0.15
HTTP42858 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
HTTP42858 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 ACE3P-201ENST00000423435 1973 ntBASIC16.01■□□□□ 0.15
HTTP42858 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 LINP1-201ENST00000417112 917 ntTSL 2 BASIC16.01■□□□□ 0.15
HTTP42858 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 ACY3-202ENST00000529256 933 ntTSL 3 BASIC16.01■□□□□ 0.15
HTTP42858 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
HTTP42858 IFNL3P1-201ENST00000595082 501 ntBASIC16.01■□□□□ 0.15
HTTP42858 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC16.01■□□□□ 0.15
HTTP42858 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC16.01■□□□□ 0.15
HTTP42858 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC16.01■□□□□ 0.15
HTTP42858 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC16.01■□□□□ 0.15
HTTP42858 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
HTTP42858 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HTTP42858 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
HTTP42858 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 KRT8P43-201ENST00000406052 1458 ntBASIC16.01■□□□□ 0.15
HTTP42858 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC16.01■□□□□ 0.15
HTTP42858 HNRNPA1P21-201ENST00000424115 961 ntBASIC16.01■□□□□ 0.15
HTTP42858 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC16.01■□□□□ 0.15
HTTP42858 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 AL359091.4-201ENST00000610052 409 ntBASIC16.01■□□□□ 0.15
HTTP42858 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 AC008741.2-201ENST00000612792 3115 ntBASIC16.01■□□□□ 0.15
HTTP42858 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HTTP42858 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
HTTP42858 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC16■□□□□ 0.15
HTTP42858 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC16■□□□□ 0.15
HTTP42858 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HTTP42858 AC010503.4-201ENST00000615487 688 ntBASIC16■□□□□ 0.15
HTTP42858 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC16■□□□□ 0.15
HTTP42858 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16■□□□□ 0.15
HTTP42858 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
HTTP42858 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
HTTP42858 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16■□□□□ 0.15
HTTP42858 GOLGA8UP-201ENST00000527159 1755 ntBASIC16■□□□□ 0.15
HTTP42858 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC16■□□□□ 0.15
HTTP42858 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HTTP42858 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 SAT1-201ENST00000379251 801 ntTSL 2 BASIC16■□□□□ 0.15
HTTP42858 SAT1-202ENST00000379253 909 ntTSL 2 BASIC16■□□□□ 0.15
HTTP42858 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16■□□□□ 0.15
HTTP42858 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC16■□□□□ 0.15
HTTP42858 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC16■□□□□ 0.15
HTTP42858 CYP2T1P-202ENST00000641596 2535 ntBASIC16■□□□□ 0.15
HTTP42858 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HTTP42858 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16■□□□□ 0.15
HTTP42858 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms