Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.17□□□□□ -0.14
MSX2P35548 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.17□□□□□ -0.14
MSX2P35548 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
MSX2P35548 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.17□□□□□ -0.14
MSX2P35548 AL109936.8-201ENST00000641772 604 ntBASIC14.17□□□□□ -0.14
MSX2P35548 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 CETN4P-206ENST00000642099 2168 ntBASIC14.17□□□□□ -0.14
MSX2P35548 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
MSX2P35548 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
MSX2P35548 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.16□□□□□ -0.14
MSX2P35548 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
MSX2P35548 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
MSX2P35548 PCDHB18P-202ENST00000526308 3197 ntBASIC14.16□□□□□ -0.14
MSX2P35548 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 AC215219.1-201ENST00000400706 1817 ntBASIC14.16□□□□□ -0.14
MSX2P35548 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
MSX2P35548 CEND1P1-201ENST00000451006 455 ntBASIC14.16□□□□□ -0.14
MSX2P35548 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.16□□□□□ -0.14
MSX2P35548 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.16□□□□□ -0.14
MSX2P35548 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.16□□□□□ -0.14
MSX2P35548 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.16□□□□□ -0.14
MSX2P35548 AL512361.1-201ENST00000554200 418 ntBASIC14.16□□□□□ -0.14
MSX2P35548 AC000095.1-201ENST00000603208 874 ntBASIC14.16□□□□□ -0.14
MSX2P35548 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.16□□□□□ -0.14
MSX2P35548 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
MSX2P35548 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX2P35548 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
MSX2P35548 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC14.15□□□□□ -0.14
MSX2P35548 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
MSX2P35548 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
MSX2P35548 AC004461.1-201ENST00000412461 403 ntBASIC14.15□□□□□ -0.14
MSX2P35548 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.15□□□□□ -0.14
MSX2P35548 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.15□□□□□ -0.14
MSX2P35548 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 SERBP1P3-201ENST00000459980 809 ntBASIC14.15□□□□□ -0.14
MSX2P35548 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.15□□□□□ -0.14
MSX2P35548 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.15□□□□□ -0.14
MSX2P35548 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 175.9 ms