Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.14■□□□□ 0.33
ERCC3P19447 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC3P19447 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC3P19447 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ERCC3P19447 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
ERCC3P19447 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC3P19447 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ERCC3P19447 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC3P19447 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.13■□□□□ 0.33
ERCC3P19447 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.13■□□□□ 0.33
ERCC3P19447 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC3P19447 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.13■□□□□ 0.33
ERCC3P19447 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 MIR33B-201ENST00000385104 96 ntBASIC17.13■□□□□ 0.33
ERCC3P19447 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ERCC3P19447 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ERCC3P19447 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 KLF2P1-201ENST00000447438 1042 ntBASIC17.13■□□□□ 0.33
ERCC3P19447 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ERCC3P19447 RPS2P36-201ENST00000456516 831 ntBASIC17.13■□□□□ 0.33
ERCC3P19447 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.13■□□□□ 0.33
ERCC3P19447 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC17.13■□□□□ 0.33
ERCC3P19447 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC3P19447 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC17.13■□□□□ 0.33
ERCC3P19447 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.13■□□□□ 0.33
ERCC3P19447 PRKXP1-201ENST00000561423 1122 ntBASIC17.13■□□□□ 0.33
ERCC3P19447 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC17.13■□□□□ 0.33
ERCC3P19447 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
ERCC3P19447 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
ERCC3P19447 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 CICP24-201ENST00000605464 2705 ntBASIC17.13■□□□□ 0.33
ERCC3P19447 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
ERCC3P19447 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ERCC3P19447 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ERCC3P19447 AL138725.1-201ENST00000407347 1314 ntBASIC17.13■□□□□ 0.33
ERCC3P19447 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC3P19447 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC3P19447 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.13■□□□□ 0.33
ERCC3P19447 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.12■□□□□ 0.33
ERCC3P19447 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
ERCC3P19447 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
ERCC3P19447 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.12■□□□□ 0.33
ERCC3P19447 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
ERCC3P19447 FAM58BP-201ENST00000439056 645 ntBASIC17.12■□□□□ 0.33
ERCC3P19447 AL596276.2-201ENST00000447525 331 ntBASIC17.12■□□□□ 0.33
ERCC3P19447 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 NAT9-224ENST00000583757 583 ntTSL 3 BASIC17.12■□□□□ 0.33
ERCC3P19447 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.12■□□□□ 0.33
ERCC3P19447 AC132192.2-201ENST00000596206 1147 ntBASIC17.12■□□□□ 0.33
ERCC3P19447 SPCS2P2-201ENST00000603270 608 ntBASIC17.12■□□□□ 0.33
ERCC3P19447 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ERCC3P19447 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ERCC3P19447 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ERCC3P19447 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ERCC3P19447 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ERCC3P19447 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC3P19447 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ERCC3P19447 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms