Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AP001979.1-201ENST00000529222 751 ntBASIC14.8□□□□□ -0.04
COL6A3P12111 AC009812.1-201ENST00000605948 1059 ntBASIC14.8□□□□□ -0.04
COL6A3P12111 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC14.8□□□□□ -0.04
COL6A3P12111 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC14.8□□□□□ -0.04
COL6A3P12111 PNLIPRP2-201ENST00000579578 1482 ntAPPRIS P5 TSL 2 BASIC14.8□□□□□ -0.04
COL6A3P12111 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.8□□□□□ -0.04
COL6A3P12111 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
COL6A3P12111 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL6A3P12111 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 RPSAP6-201ENST00000417882 882 ntBASIC14.79□□□□□ -0.04
COL6A3P12111 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC14.79□□□□□ -0.04
COL6A3P12111 AP001505.1-201ENST00000569966 824 ntBASIC14.79□□□□□ -0.04
COL6A3P12111 AL121992.3-201ENST00000606186 346 ntBASIC14.79□□□□□ -0.04
COL6A3P12111 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC14.79□□□□□ -0.04
COL6A3P12111 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC14.79□□□□□ -0.04
COL6A3P12111 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC14.79□□□□□ -0.04
COL6A3P12111 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 CTNNBL1-203ENST00000373473 1493 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 NDUFB10P1-201ENST00000567319 521 ntBASIC14.79□□□□□ -0.04
COL6A3P12111 AP001180.4-201ENST00000584167 823 ntTSL 3 BASIC14.79□□□□□ -0.04
COL6A3P12111 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 AC063977.2-201ENST00000601996 421 ntBASIC14.79□□□□□ -0.04
COL6A3P12111 KF455155.1-201ENST00000604493 303 ntBASIC14.79□□□□□ -0.04
COL6A3P12111 AC005906.2-208ENST00000638655 1286 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
COL6A3P12111 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A3P12111 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.79□□□□□ -0.04
COL6A3P12111 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 FKBP4P7-201ENST00000433874 1363 ntBASIC14.78□□□□□ -0.04
COL6A3P12111 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC14.78□□□□□ -0.04
COL6A3P12111 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.78□□□□□ -0.04
COL6A3P12111 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 PHBP10-201ENST00000416467 784 ntBASIC14.78□□□□□ -0.04
COL6A3P12111 LINC01508-201ENST00000425666 1013 ntTSL 3 BASIC14.78□□□□□ -0.04
COL6A3P12111 AC023051.2-201ENST00000541141 460 ntBASIC14.78□□□□□ -0.04
COL6A3P12111 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 CCND3P2-201ENST00000579393 537 ntBASIC14.78□□□□□ -0.04
COL6A3P12111 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 KRT18P45-201ENST00000515347 1333 ntBASIC14.78□□□□□ -0.04
COL6A3P12111 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A3P12111 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.78□□□□□ -0.04
COL6A3P12111 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.78□□□□□ -0.04
COL6A3P12111 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A3P12111 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.78□□□□□ -0.04
COL6A3P12111 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A3P12111 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A3P12111 MIR632-201ENST00000385193 94 ntBASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms