Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 OR2I1P-208ENST00000641137 4948 ntBASIC11.19□□□□□ -0.62
HLA-DQA1P01909 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 AC072061.1-201ENST00000569710 2234 ntBASIC11.19□□□□□ -0.62
HLA-DQA1P01909 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 PRSS29P-201ENST00000440800 595 ntBASIC11.19□□□□□ -0.62
HLA-DQA1P01909 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 RNA5SP419-201ENST00000515908 135 ntBASIC11.19□□□□□ -0.62
HLA-DQA1P01909 IGHV3-22-201ENST00000520721 359 ntBASIC11.19□□□□□ -0.62
HLA-DQA1P01909 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 AC073869.1-201ENST00000415574 2762 ntBASIC11.19□□□□□ -0.62
HLA-DQA1P01909 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 EML1-203ENST00000334192 4064 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DQA1P01909 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 CIC-204ENST00000572681 8218 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 CRCP-205ENST00000431089 942 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 VN2R19P-201ENST00000442399 1052 ntBASIC11.18□□□□□ -0.62
HLA-DQA1P01909 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 RPL13AP23-201ENST00000480739 586 ntBASIC11.18□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms