Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.67□□□□□ -0.38
SDCBPO00560 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC12.67□□□□□ -0.38
SDCBPO00560 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.67□□□□□ -0.38
SDCBPO00560 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.67□□□□□ -0.38
SDCBPO00560 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SDCBPO00560 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 AGGF1P1-201ENST00000509500 2073 ntBASIC12.66□□□□□ -0.38
SDCBPO00560 CLK3P2-201ENST00000427566 1453 ntBASIC12.66□□□□□ -0.38
SDCBPO00560 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
SDCBPO00560 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 AC130686.1-201ENST00000622936 2466 ntBASIC12.66□□□□□ -0.38
SDCBPO00560 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC12.66□□□□□ -0.38
SDCBPO00560 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 AL137783.1-201ENST00000623494 1896 ntBASIC12.66□□□□□ -0.38
SDCBPO00560 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.66□□□□□ -0.38
SDCBPO00560 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 RNA5SP421-201ENST00000516864 134 ntBASIC12.66□□□□□ -0.38
SDCBPO00560 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.66□□□□□ -0.38
SDCBPO00560 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 RARRES2P5-201ENST00000564013 466 ntBASIC12.66□□□□□ -0.38
SDCBPO00560 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.66□□□□□ -0.38
SDCBPO00560 AC005498.2-205ENST00000593218 784 ntBASIC12.66□□□□□ -0.38
SDCBPO00560 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 AC016397.2-201ENST00000624848 1985 ntBASIC12.66□□□□□ -0.38
SDCBPO00560 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SDCBPO00560 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
SDCBPO00560 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
SDCBPO00560 TP73-211ENST00000604074 4806 ntTSL 5 BASIC12.65□□□□□ -0.38
SDCBPO00560 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
SDCBPO00560 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.65□□□□□ -0.38
SDCBPO00560 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
SDCBPO00560 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 SPDYE19P-201ENST00000338590 713 ntBASIC12.65□□□□□ -0.38
SDCBPO00560 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 OSM-203ENST00000403463 464 ntTSL 3 BASIC12.65□□□□□ -0.38
SDCBPO00560 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.65□□□□□ -0.38
SDCBPO00560 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC12.65□□□□□ -0.38
SDCBPO00560 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.65□□□□□ -0.38
SDCBPO00560 FAM86LP-201ENST00000478302 853 ntBASIC12.65□□□□□ -0.38
SDCBPO00560 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC12.65□□□□□ -0.38
SDCBPO00560 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.65□□□□□ -0.38
SDCBPO00560 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.65□□□□□ -0.38
SDCBPO00560 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms