Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 RPSAP43-201ENST00000402237 625 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 RPL13P2-201ENST00000440687 659 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 HLA-V-204ENST00000476601 1289 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 SDHAP3-202ENST00000515467 728 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC069262.1-201ENST00000539058 672 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC092865.5-201ENST00000545435 363 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 TIMM17BP1-201ENST00000545713 516 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC051619.7-201ENST00000568314 623 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AL671883.3-201ENST00000603274 991 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 SPDYE12P-201ENST00000618416 771 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 AC018442.1-201ENST00000421439 2061 ntBASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC12.87□□□□□ -0.35
CHMP1AQ9HD42 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AC005562.1-201ENST00000583030 3219 ntBASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 LILRP1-201ENST00000444199 1370 ntBASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AC254562.1-201ENST00000417586 456 ntBASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CNN2P2-201ENST00000443536 909 ntBASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CNN2P3-201ENST00000450201 906 ntBASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AC125807.1-201ENST00000483097 614 ntBASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 SAMD11P1-201ENST00000571429 661 ntBASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 INO80C-210ENST00000590757 595 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AL136317.3-201ENST00000618497 906 ntBASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms