Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CHD8Q9HCK8 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 METTL22-203ENST00000561758 1312 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 GCK-209ENST00000616242 2260 ntTSL 5 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 HDGF-202ENST00000368206 960 ntTSL 5 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 U3.41-201ENST00000408711 219 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 OR4C14P-201ENST00000440929 923 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 KLF17P1-201ENST00000547105 1126 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 RN7SL605P-201ENST00000577229 281 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 MIR6165-201ENST00000614803 84 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 BX322562.1-201ENST00000617004 561 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 MARK2P17-201ENST00000498560 841 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 OR52V1P-201ENST00000515557 898 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 AC009041.4-201ENST00000620075 638 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 AC134878.2-201ENST00000620700 1265 ntBASIC13.36□□□□□ -0.27
CHD8Q9HCK8 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHD8Q9HCK8 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 AP000533.1-201ENST00000456143 1177 ntBASIC13.35□□□□□ -0.27
CHD8Q9HCK8 HNRNPA1P72-201ENST00000529511 967 ntBASIC13.35□□□□□ -0.27
CHD8Q9HCK8 METTL7AP1-201ENST00000547343 496 ntBASIC13.35□□□□□ -0.27
CHD8Q9HCK8 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 PMM2-216ENST00000569958 698 ntTSL 2 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 AC090386.2-201ENST00000623010 1039 ntBASIC13.35□□□□□ -0.27
CHD8Q9HCK8 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 GOSR2-231ENST00000640007 1425 ntTSL 5 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 AC010491.1-201ENST00000563101 2797 ntBASIC13.35□□□□□ -0.27
CHD8Q9HCK8 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 ABCD1P4-201ENST00000399687 604 ntBASIC13.35□□□□□ -0.27
CHD8Q9HCK8 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CHD8Q9HCK8 KRT18P62-201ENST00000446618 1287 ntBASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms