Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
COL25A1Q9BXS0 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.5□□□□□ -0.09
COL25A1Q9BXS0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
COL25A1Q9BXS0 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL25A1Q9BXS0 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL25A1Q9BXS0 SALL4P5-201ENST00000419001 1760 ntBASIC14.5□□□□□ -0.09
COL25A1Q9BXS0 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL25A1Q9BXS0 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL25A1Q9BXS0 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 ABCD1P4-201ENST00000399687 604 ntBASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 RFNG-202ENST00000429557 994 ntTSL 5 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 RN7SL477P-201ENST00000488440 286 ntBASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 PRDX2P3-201ENST00000515779 586 ntBASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL25A1Q9BXS0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 NR1I2-207ENST00000640105 1305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 LINC00265-2P-201ENST00000413372 782 ntBASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 ST13P19-201ENST00000442505 1124 ntBASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AC113398.1-201ENST00000464124 406 ntBASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AC093300.1-201ENST00000510368 1201 ntBASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 IGHV7-56-201ENST00000518372 351 ntBASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AC044839.1-201ENST00000532307 541 ntTSL 5 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AC005332.8-201ENST00000622750 2735 ntBASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 AC067931.2-201ENST00000623655 2003 ntBASIC14.48□□□□□ -0.09
COL25A1Q9BXS0 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.47□□□□□ -0.09
COL25A1Q9BXS0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL25A1Q9BXS0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL25A1Q9BXS0 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL25A1Q9BXS0 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL25A1Q9BXS0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL25A1Q9BXS0 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL25A1Q9BXS0 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL25A1Q9BXS0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms