Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SYNE4Q8N205 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 AL022334.2-201ENST00000610000 484 ntBASIC18.2■□□□□ 0.5
SYNE4Q8N205 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNE4Q8N205 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNE4Q8N205 USP35-204ENST00000530267 2419 ntTSL 2 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNE4Q8N205 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNE4Q8N205 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNE4Q8N205 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SYNE4Q8N205 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SYNE4Q8N205 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 PIN4P1-201ENST00000451079 396 ntBASIC18.19■□□□□ 0.5
SYNE4Q8N205 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 AC130709.1-201ENST00000484779 1212 ntBASIC18.19■□□□□ 0.5
SYNE4Q8N205 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 AP002353.1-201ENST00000528257 1599 ntBASIC18.19■□□□□ 0.5
SYNE4Q8N205 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 AC005632.3-201ENST00000605544 308 ntBASIC18.19■□□□□ 0.5
SYNE4Q8N205 MIR6756-201ENST00000616240 63 ntBASIC18.19■□□□□ 0.5
SYNE4Q8N205 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC18.19■□□□□ 0.5
SYNE4Q8N205 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 AHCYP4-201ENST00000419201 1315 ntBASIC18.19■□□□□ 0.5
SYNE4Q8N205 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SYNE4Q8N205 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 AL807761.2-201ENST00000422849 729 ntBASIC18.18■□□□□ 0.5
SYNE4Q8N205 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 RHEB-207ENST00000496004 744 ntTSL 2 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 IGHV3-37-201ENST00000518544 340 ntBASIC18.18■□□□□ 0.5
SYNE4Q8N205 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 AC124068.2-201ENST00000569473 1109 ntBASIC18.18■□□□□ 0.5
SYNE4Q8N205 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 AC084781.1-201ENST00000613737 656 ntBASIC18.18■□□□□ 0.5
SYNE4Q8N205 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SYNE4Q8N205 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SYNE4Q8N205 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms