Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
PCDH1Q08174 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
PCDH1Q08174 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.3□□□□□ -0.12
PCDH1Q08174 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.29□□□□□ -0.12
PCDH1Q08174 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.29□□□□□ -0.12
PCDH1Q08174 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
PCDH1Q08174 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 AC006001.1-201ENST00000325130 474 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
PCDH1Q08174 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 ARSEP1-201ENST00000420443 635 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 C2orf27AP3-201ENST00000434123 579 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 AC016694.1-201ENST00000434179 700 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.29□□□□□ -0.12
PCDH1Q08174 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.29□□□□□ -0.12
PCDH1Q08174 AC017007.3-201ENST00000479865 435 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.29□□□□□ -0.12
PCDH1Q08174 AP003171.2-201ENST00000528208 925 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 CR383656.12-201ENST00000549567 513 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
PCDH1Q08174 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
PCDH1Q08174 AL354718.3-201ENST00000616414 581 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 CR382287.1-201ENST00000623954 586 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.29□□□□□ -0.12
PCDH1Q08174 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 AC020910.5-201ENST00000623668 1865 ntBASIC14.29□□□□□ -0.12
PCDH1Q08174 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.29□□□□□ -0.12
PCDH1Q08174 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
PCDH1Q08174 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCDH1Q08174 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.29□□□□□ -0.12
PCDH1Q08174 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
PCDH1Q08174 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PCDH1Q08174 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.28□□□□□ -0.12
PCDH1Q08174 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
PCDH1Q08174 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.28□□□□□ -0.12
PCDH1Q08174 STK33P1-201ENST00000423835 1218 ntBASIC14.28□□□□□ -0.12
PCDH1Q08174 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.28□□□□□ -0.12
PCDH1Q08174 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCDH1Q08174 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms