Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
H3F3AP84243 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.25□□□□□ -0.29
H3F3AP84243 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.25□□□□□ -0.29
H3F3AP84243 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
H3F3AP84243 AC010141.1-201ENST00000411585 623 ntBASIC13.25□□□□□ -0.29
H3F3AP84243 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.25□□□□□ -0.29
H3F3AP84243 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.25□□□□□ -0.29
H3F3AP84243 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.25□□□□□ -0.29
H3F3AP84243 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.25□□□□□ -0.29
H3F3AP84243 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.25□□□□□ -0.29
H3F3AP84243 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.25□□□□□ -0.29
H3F3AP84243 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.25□□□□□ -0.29
H3F3AP84243 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.25□□□□□ -0.29
H3F3AP84243 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.25□□□□□ -0.29
H3F3AP84243 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 AC126335.2-201ENST00000623362 4637 ntBASIC13.25□□□□□ -0.29
H3F3AP84243 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.25□□□□□ -0.29
H3F3AP84243 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
H3F3AP84243 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
H3F3AP84243 AC139712.1-201ENST00000378256 1875 ntBASIC13.25□□□□□ -0.29
H3F3AP84243 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.25□□□□□ -0.29
H3F3AP84243 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
H3F3AP84243 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.24□□□□□ -0.29
H3F3AP84243 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
H3F3AP84243 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 YBX1P6-201ENST00000442962 1002 ntBASIC13.24□□□□□ -0.29
H3F3AP84243 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.24□□□□□ -0.29
H3F3AP84243 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 GRK6P1-201ENST00000400595 1711 ntBASIC13.24□□□□□ -0.29
H3F3AP84243 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms