Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.06□□□□□ -0.16
LIM2P55344 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 MIR4683-201ENST00000579659 81 ntBASIC14.06□□□□□ -0.16
LIM2P55344 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.06□□□□□ -0.16
LIM2P55344 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.06□□□□□ -0.16
LIM2P55344 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
LIM2P55344 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 KRT8P4-201ENST00000509735 1454 ntBASIC14.06□□□□□ -0.16
LIM2P55344 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
LIM2P55344 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.05□□□□□ -0.16
LIM2P55344 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.05□□□□□ -0.16
LIM2P55344 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.05□□□□□ -0.16
LIM2P55344 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
LIM2P55344 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.05□□□□□ -0.16
LIM2P55344 AL136309.1-201ENST00000403917 691 ntBASIC14.05□□□□□ -0.16
LIM2P55344 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.05□□□□□ -0.16
LIM2P55344 CNN2P10-201ENST00000443067 918 ntBASIC14.05□□□□□ -0.16
LIM2P55344 ALG3P1-201ENST00000508806 1114 ntBASIC14.05□□□□□ -0.16
LIM2P55344 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.05□□□□□ -0.16
LIM2P55344 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.05□□□□□ -0.16
LIM2P55344 BX088702.1-201ENST00000610784 235 ntBASIC14.05□□□□□ -0.16
LIM2P55344 ZACNP1-201ENST00000612259 710 ntBASIC14.05□□□□□ -0.16
LIM2P55344 AC002472.3-201ENST00000640124 621 ntBASIC14.05□□□□□ -0.16
LIM2P55344 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.05□□□□□ -0.16
LIM2P55344 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LIM2P55344 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
LIM2P55344 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
LIM2P55344 AC104581.4-201ENST00000623126 3052 ntBASIC14.05□□□□□ -0.16
LIM2P55344 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 AC015802.1-201ENST00000588104 1449 ntBASIC14.05□□□□□ -0.16
LIM2P55344 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.05□□□□□ -0.16
LIM2P55344 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LIM2P55344 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LIM2P55344 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
LIM2P55344 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LIM2P55344 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
LIM2P55344 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.04□□□□□ -0.16
LIM2P55344 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
LIM2P55344 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.04□□□□□ -0.16
LIM2P55344 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
LIM2P55344 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.04□□□□□ -0.16
LIM2P55344 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.04□□□□□ -0.16
LIM2P55344 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.04□□□□□ -0.16
LIM2P55344 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.04□□□□□ -0.16
LIM2P55344 HOMER2P2-201ENST00000451621 847 ntBASIC14.04□□□□□ -0.16
LIM2P55344 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.04□□□□□ -0.16
LIM2P55344 PPY2P-201ENST00000582808 702 ntBASIC14.04□□□□□ -0.16
LIM2P55344 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms