Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.43□□□□□ -0.1
HNF4AP41235 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 AC126335.2-201ENST00000623362 4637 ntBASIC14.43□□□□□ -0.1
HNF4AP41235 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
HNF4AP41235 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.43□□□□□ -0.1
HNF4AP41235 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HNF4AP41235 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HNF4AP41235 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
HNF4AP41235 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HNF4AP41235 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.43□□□□□ -0.1
HNF4AP41235 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.43□□□□□ -0.1
HNF4AP41235 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HNF4AP41235 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 AGGF1P1-201ENST00000509500 2073 ntBASIC14.42□□□□□ -0.1
HNF4AP41235 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.42□□□□□ -0.1
HNF4AP41235 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.42□□□□□ -0.1
HNF4AP41235 AC245100.3-201ENST00000441281 285 ntBASIC14.42□□□□□ -0.1
HNF4AP41235 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 GAPDHP21-201ENST00000450301 1010 ntBASIC14.42□□□□□ -0.1
HNF4AP41235 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.42□□□□□ -0.1
HNF4AP41235 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.42□□□□□ -0.1
HNF4AP41235 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.42□□□□□ -0.1
HNF4AP41235 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 USP32P1-208ENST00000506594 1164 ntBASIC14.42□□□□□ -0.1
HNF4AP41235 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.42□□□□□ -0.1
HNF4AP41235 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 BTNL10-201ENST00000595971 695 ntBASIC14.42□□□□□ -0.1
HNF4AP41235 AC233724.13-201ENST00000598383 410 ntBASIC14.42□□□□□ -0.1
HNF4AP41235 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.42□□□□□ -0.1
HNF4AP41235 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
HNF4AP41235 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HNF4AP41235 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
HNF4AP41235 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 AP001267.2-201ENST00000532619 2086 ntBASIC14.42□□□□□ -0.1
HNF4AP41235 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
HNF4AP41235 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HNF4AP41235 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HNF4AP41235 AL138725.1-201ENST00000407347 1314 ntBASIC14.41□□□□□ -0.1
HNF4AP41235 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HNF4AP41235 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HNF4AP41235 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HNF4AP41235 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.41□□□□□ -0.1
HNF4AP41235 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HNF4AP41235 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HNF4AP41235 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HNF4AP41235 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HNF4AP41235 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.41□□□□□ -0.1
HNF4AP41235 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.41□□□□□ -0.1
HNF4AP41235 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms