Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
SMARCA1P28370 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.86■□□□□ 0.29
SMARCA1P28370 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SMARCA1P28370 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.85■□□□□ 0.29
SMARCA1P28370 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SMARCA1P28370 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SMARCA1P28370 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.85■□□□□ 0.29
SMARCA1P28370 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
SMARCA1P28370 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.85■□□□□ 0.29
SMARCA1P28370 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SMARCA1P28370 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.85■□□□□ 0.29
SMARCA1P28370 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SMARCA1P28370 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.85■□□□□ 0.29
SMARCA1P28370 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.85■□□□□ 0.29
SMARCA1P28370 AC125604.1-201ENST00000496255 707 ntBASIC16.85■□□□□ 0.29
SMARCA1P28370 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.85■□□□□ 0.29
SMARCA1P28370 SCARNA20.5-201ENST00000516991 142 ntBASIC16.85■□□□□ 0.29
SMARCA1P28370 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.85■□□□□ 0.29
SMARCA1P28370 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.85■□□□□ 0.29
SMARCA1P28370 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.85■□□□□ 0.29
SMARCA1P28370 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.85■□□□□ 0.29
SMARCA1P28370 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
SMARCA1P28370 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.85■□□□□ 0.29
SMARCA1P28370 MIR3615-201ENST00000581999 87 ntBASIC16.85■□□□□ 0.29
SMARCA1P28370 AC103810.3-201ENST00000583567 96 ntBASIC16.85■□□□□ 0.29
SMARCA1P28370 AC020914.3-201ENST00000594712 304 ntBASIC16.85■□□□□ 0.29
SMARCA1P28370 AL645939.5-201ENST00000606834 243 ntBASIC16.85■□□□□ 0.29
SMARCA1P28370 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.85■□□□□ 0.29
SMARCA1P28370 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
SMARCA1P28370 C8orf49-201ENST00000525043 1968 ntBASIC16.85■□□□□ 0.29
SMARCA1P28370 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.85■□□□□ 0.29
SMARCA1P28370 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SMARCA1P28370 AC068587.6-202ENST00000641839 5619 ntBASIC16.85■□□□□ 0.29
SMARCA1P28370 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.85■□□□□ 0.29
SMARCA1P28370 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SMARCA1P28370 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SMARCA1P28370 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SMARCA1P28370 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.84■□□□□ 0.29
SMARCA1P28370 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.84■□□□□ 0.29
SMARCA1P28370 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC16.84■□□□□ 0.29
SMARCA1P28370 AC124068.2-201ENST00000569473 1109 ntBASIC16.84■□□□□ 0.29
SMARCA1P28370 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 DRG2-220ENST00000583355 891 ntTSL 3 BASIC16.84■□□□□ 0.29
SMARCA1P28370 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.84■□□□□ 0.29
SMARCA1P28370 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC16.84■□□□□ 0.29
SMARCA1P28370 AC244093.1-201ENST00000610837 814 ntBASIC16.84■□□□□ 0.29
SMARCA1P28370 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SMARCA1P28370 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.84■□□□□ 0.29
SMARCA1P28370 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SMARCA1P28370 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMARCA1P28370 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SMARCA1P28370 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SMARCA1P28370 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
SMARCA1P28370 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.29
SMARCA1P28370 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.29
SMARCA1P28370 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SMARCA1P28370 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SMARCA1P28370 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms