Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC11.53□□□□□ -0.56
CXCL1P09341 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 PCDHA5-203ENST00000614258 4248 ntBASIC11.52□□□□□ -0.56
CXCL1P09341 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC11.52□□□□□ -0.56
CXCL1P09341 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC11.52□□□□□ -0.56
CXCL1P09341 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CXCL1P09341 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
CXCL1P09341 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CXCL1P09341 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC11.52□□□□□ -0.56
CXCL1P09341 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
CXCL1P09341 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC11.52□□□□□ -0.56
CXCL1P09341 AC025580.3-201ENST00000617932 1424 ntBASIC11.52□□□□□ -0.56
CXCL1P09341 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
CXCL1P09341 STK3-218ENST00000617590 2485 ntTSL 5 BASIC11.52□□□□□ -0.56
CXCL1P09341 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CXCL1P09341 PEG13-201ENST00000631594 5667 ntBASIC11.52□□□□□ -0.56
CXCL1P09341 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC11.52□□□□□ -0.56
CXCL1P09341 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CXCL1P09341 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
CXCL1P09341 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
CXCL1P09341 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
CXCL1P09341 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC11.52□□□□□ -0.57
CXCL1P09341 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC11.52□□□□□ -0.57
CXCL1P09341 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 RNA5SP410-201ENST00000516285 106 ntBASIC11.52□□□□□ -0.57
CXCL1P09341 PENK-208ENST00000523051 772 ntTSL 5 BASIC11.52□□□□□ -0.57
CXCL1P09341 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC11.52□□□□□ -0.57
CXCL1P09341 AC112191.1-201ENST00000523689 701 ntBASIC11.52□□□□□ -0.57
CXCL1P09341 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC11.52□□□□□ -0.57
CXCL1P09341 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC11.52□□□□□ -0.57
CXCL1P09341 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 NKG7-205ENST00000600427 520 ntTSL 3 BASIC11.52□□□□□ -0.57
CXCL1P09341 MIR7706-201ENST00000613747 67 ntBASIC11.52□□□□□ -0.57
CXCL1P09341 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
CXCL1P09341 AC008267.7-201ENST00000624570 1194 ntBASIC11.52□□□□□ -0.57
CXCL1P09341 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC11.52□□□□□ -0.57
CXCL1P09341 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC11.52□□□□□ -0.57
CXCL1P09341 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.52□□□□□ -0.57
CXCL1P09341 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC11.52□□□□□ -0.57
CXCL1P09341 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 REM2-202ENST00000536884 1331 ntTSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 BCAR1-209ENST00000546196 1340 ntBASIC11.52□□□□□ -0.57
CXCL1P09341 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC11.52□□□□□ -0.57
CXCL1P09341 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
CXCL1P09341 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
CXCL1P09341 AL136982.4-201ENST00000437689 1740 ntBASIC11.52□□□□□ -0.57
CXCL1P09341 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC11.52□□□□□ -0.57
CXCL1P09341 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC11.52□□□□□ -0.57
CXCL1P09341 AGAP12P-201ENST00000585227 2359 ntBASIC11.52□□□□□ -0.57
CXCL1P09341 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
CXCL1P09341 AC026992.2-203ENST00000563004 2419 ntBASIC11.51□□□□□ -0.57
CXCL1P09341 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 AC024075.2-201ENST00000598112 1473 ntBASIC11.51□□□□□ -0.57
CXCL1P09341 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
CXCL1P09341 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 ENDOV-203ENST00000517795 2548 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC11.51□□□□□ -0.57
CXCL1P09341 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
CXCL1P09341 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
CXCL1P09341 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
CXCL1P09341 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CXCL1P09341 LINC00567-201ENST00000569854 3409 ntBASIC11.51□□□□□ -0.57
CXCL1P09341 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC11.51□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms