Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.65■□□□□ 0.1
RTN3O95197 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RTN3O95197 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.65■□□□□ 0.1
RTN3O95197 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RTN3O95197 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
RTN3O95197 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.65■□□□□ 0.1
RTN3O95197 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RTN3O95197 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RTN3O95197 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RTN3O95197 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RTN3O95197 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RTN3O95197 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.65■□□□□ 0.1
RTN3O95197 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RTN3O95197 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC15.64■□□□□ 0.09
RTN3O95197 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.64■□□□□ 0.09
RTN3O95197 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
RTN3O95197 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
RTN3O95197 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
RTN3O95197 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
RTN3O95197 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.64■□□□□ 0.09
RTN3O95197 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.64■□□□□ 0.09
RTN3O95197 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.64■□□□□ 0.09
RTN3O95197 SHC1P1-201ENST00000425230 1745 ntBASIC15.64■□□□□ 0.09
RTN3O95197 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.64■□□□□ 0.09
RTN3O95197 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.64■□□□□ 0.09
RTN3O95197 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
RTN3O95197 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.64■□□□□ 0.09
RTN3O95197 AP001258.2-201ENST00000529891 490 ntBASIC15.64■□□□□ 0.09
RTN3O95197 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.64■□□□□ 0.09
RTN3O95197 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.64■□□□□ 0.09
RTN3O95197 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 BX088702.1-201ENST00000610784 235 ntBASIC15.64■□□□□ 0.09
RTN3O95197 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.64■□□□□ 0.09
RTN3O95197 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.64■□□□□ 0.09
RTN3O95197 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.64■□□□□ 0.09
RTN3O95197 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.64■□□□□ 0.09
RTN3O95197 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RTN3O95197 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.64■□□□□ 0.09
RTN3O95197 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
RTN3O95197 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
RTN3O95197 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.64■□□□□ 0.09
RTN3O95197 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
RTN3O95197 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
RTN3O95197 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
RTN3O95197 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC15.63■□□□□ 0.09
RTN3O95197 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.63■□□□□ 0.09
RTN3O95197 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
RTN3O95197 AGAP7P-201ENST00000582299 2062 ntBASIC15.63■□□□□ 0.09
RTN3O95197 AGAP14-201ENST00000624701 2060 ntBASIC15.63■□□□□ 0.09
RTN3O95197 PCDHA3-202ENST00000532566 4594 ntBASIC15.63■□□□□ 0.09
RTN3O95197 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.63■□□□□ 0.09
RTN3O95197 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 MIR1247-201ENST00000408206 136 ntBASIC15.63■□□□□ 0.09
RTN3O95197 AC010141.1-201ENST00000411585 623 ntBASIC15.63■□□□□ 0.09
RTN3O95197 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 KRT8P13-201ENST00000463294 1010 ntBASIC15.63■□□□□ 0.09
RTN3O95197 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.63■□□□□ 0.09
RTN3O95197 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RTN3O95197 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.63■□□□□ 0.09
RTN3O95197 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms