Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 ZBED1P1-201ENST00000502364 1930 ntBASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 CICP12-201ENST00000455801 843 ntBASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 AC012618.1-201ENST00000461223 412 ntBASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 ALG3P1-201ENST00000508806 1114 ntBASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 AC079328.1-201ENST00000560358 952 ntBASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC17.1■□□□□ 0.33
CTDP1Q9Y5B0 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 RN7SKP214-201ENST00000364208 315 ntBASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 ACTG1P2-201ENST00000415776 1125 ntBASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 ACTG1P11-201ENST00000425411 1125 ntBASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 RCC2P8-201ENST00000502779 1035 ntBASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 RNA5SP423-201ENST00000517127 109 ntBASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 AC097724.1-201ENST00000609581 426 ntBASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 AC008132.1-202ENST00000342005 1389 ntBASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CTDP1Q9Y5B0 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CTDP1Q9Y5B0 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CTDP1Q9Y5B0 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms