Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RPL3P5-201ENST00000441645 1232 ntBASIC21.67■■□□□ 1.06
SCAPERQ9BY12 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 GRPEL2P1-201ENST00000453145 339 ntBASIC21.67■■□□□ 1.06
SCAPERQ9BY12 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 AL132994.1-201ENST00000554098 400 ntBASIC21.67■■□□□ 1.06
SCAPERQ9BY12 AC145285.5-201ENST00000562217 361 ntBASIC21.67■■□□□ 1.06
SCAPERQ9BY12 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 APOC1-209ENST00000592885 562 ntTSL 3 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 AL160191.2-201ENST00000603975 601 ntBASIC21.67■■□□□ 1.06
SCAPERQ9BY12 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC21.67■■□□□ 1.06
SCAPERQ9BY12 AC015688.4-201ENST00000580780 1647 ntBASIC21.66■■□□□ 1.06
SCAPERQ9BY12 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 GEMIN8P4-201ENST00000380526 729 ntBASIC21.66■■□□□ 1.06
SCAPERQ9BY12 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 RN7SL375P-201ENST00000492442 298 ntBASIC21.66■■□□□ 1.06
SCAPERQ9BY12 F11R-204ENST00000537746 1245 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 MIR6816-201ENST00000620368 66 ntBASIC21.66■■□□□ 1.06
SCAPERQ9BY12 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 PCDHA1-201ENST00000378133 2726 ntBASIC21.66■■□□□ 1.06
SCAPERQ9BY12 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC21.66■■□□□ 1.06
SCAPERQ9BY12 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 AC011270.2-201ENST00000624293 2550 ntBASIC21.65■■□□□ 1.06
SCAPERQ9BY12 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCAPERQ9BY12 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC21.64■■□□□ 1.06
SCAPERQ9BY12 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SCAPERQ9BY12 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC21.64■■□□□ 1.06
SCAPERQ9BY12 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC21.64■■□□□ 1.06
SCAPERQ9BY12 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC21.64■■□□□ 1.06
SCAPERQ9BY12 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms