Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 CICP14-201ENST00000629111 2732 ntBASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 MIR33B-201ENST00000385104 96 ntBASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 PFN2-206ENST00000461930 606 ntTSL 4 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 AC006453.1-201ENST00000636037 1257 ntBASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 AC026803.1-201ENST00000569130 274 ntBASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 AC128714.1-201ENST00000637035 887 ntBASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 TBC1D3J-201ENST00000620719 1426 ntBASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PAAF1Q9BRP4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.64■□□□□ 0.1
PAAF1Q9BRP4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.1
PAAF1Q9BRP4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms