Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 PTGER4P2-201ENST00000328411 252 ntBASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 AL035414.1-201ENST00000451327 857 ntBASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 PTGER4P3-201ENST00000458150 252 ntBASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 RN7SL357P-201ENST00000581065 298 ntBASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 CSNK1G2P1-201ENST00000442675 955 ntBASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 RN7SL494P-201ENST00000461517 304 ntBASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CCDC88AQ3V6T2 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AC018442.1-201ENST00000421439 2061 ntBASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AL136172.1-201ENST00000598590 1394 ntBASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 IGHEP1-201ENST00000521393 651 ntBASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AC003686.1-201ENST00000550956 1034 ntBASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AC023968.2-201ENST00000560593 1049 ntBASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 NT5C-204ENST00000578337 582 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AC010632.2-201ENST00000588369 1224 ntBASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC88AQ3V6T2 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms