Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
PCDH1Q08174 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
PCDH1Q08174 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PCDH1Q08174 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
PCDH1Q08174 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
PCDH1Q08174 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.31□□□□□ -0.12
PCDH1Q08174 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
PCDH1Q08174 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
PCDH1Q08174 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
PCDH1Q08174 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.31□□□□□ -0.12
PCDH1Q08174 AC152010.1-201ENST00000415779 2006 ntBASIC14.31□□□□□ -0.12
PCDH1Q08174 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.31□□□□□ -0.12
PCDH1Q08174 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
PCDH1Q08174 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 INE1-201ENST00000456273 945 ntBASIC14.31□□□□□ -0.12
PCDH1Q08174 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.31□□□□□ -0.12
PCDH1Q08174 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
PCDH1Q08174 AP005018.1-201ENST00000525475 301 ntBASIC14.31□□□□□ -0.12
PCDH1Q08174 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.31□□□□□ -0.12
PCDH1Q08174 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.31□□□□□ -0.12
PCDH1Q08174 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.31□□□□□ -0.12
PCDH1Q08174 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.31□□□□□ -0.12
PCDH1Q08174 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.31□□□□□ -0.12
PCDH1Q08174 AC105233.6-201ENST00000642093 218 ntBASIC14.31□□□□□ -0.12
PCDH1Q08174 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.31□□□□□ -0.12
PCDH1Q08174 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 KHSRPP1-201ENST00000427983 1768 ntBASIC14.31□□□□□ -0.12
PCDH1Q08174 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
PCDH1Q08174 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.31□□□□□ -0.12
PCDH1Q08174 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PCDH1Q08174 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
PCDH1Q08174 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.3□□□□□ -0.12
PCDH1Q08174 AC004945.1-201ENST00000416738 983 ntBASIC14.3□□□□□ -0.12
PCDH1Q08174 COX5BP8-201ENST00000416911 349 ntBASIC14.3□□□□□ -0.12
PCDH1Q08174 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.3□□□□□ -0.12
PCDH1Q08174 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 NME2P1-201ENST00000426182 414 ntBASIC14.3□□□□□ -0.12
PCDH1Q08174 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.3□□□□□ -0.12
PCDH1Q08174 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.3□□□□□ -0.12
PCDH1Q08174 PUDPP3-201ENST00000445368 636 ntBASIC14.3□□□□□ -0.12
PCDH1Q08174 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.3□□□□□ -0.12
PCDH1Q08174 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.3□□□□□ -0.12
PCDH1Q08174 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.3□□□□□ -0.12
PCDH1Q08174 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PCDH1Q08174 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.3□□□□□ -0.12
PCDH1Q08174 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.3□□□□□ -0.12
PCDH1Q08174 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.3□□□□□ -0.12
PCDH1Q08174 AC008825.2-201ENST00000603374 718 ntBASIC14.3□□□□□ -0.12
PCDH1Q08174 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.3□□□□□ -0.12
PCDH1Q08174 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.3□□□□□ -0.12
PCDH1Q08174 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
PCDH1Q08174 AC006453.4-201ENST00000636949 1252 ntBASIC14.3□□□□□ -0.12
PCDH1Q08174 AC067750.1-201ENST00000608826 6545 ntBASIC14.3□□□□□ -0.12
PCDH1Q08174 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.3□□□□□ -0.12
PCDH1Q08174 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms