Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TPM1P09493 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 COL6A4P2-202ENST00000504443 2753 ntBASIC16.43■□□□□ 0.22
TPM1P09493 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.43■□□□□ 0.22
TPM1P09493 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.43■□□□□ 0.22
TPM1P09493 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.43■□□□□ 0.22
TPM1P09493 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.43■□□□□ 0.22
TPM1P09493 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
TPM1P09493 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TPM1P09493 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 AL022342.1-201ENST00000400363 863 ntBASIC16.42■□□□□ 0.22
TPM1P09493 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.42■□□□□ 0.22
TPM1P09493 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.42■□□□□ 0.22
TPM1P09493 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.42■□□□□ 0.22
TPM1P09493 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.42■□□□□ 0.22
TPM1P09493 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.42■□□□□ 0.22
TPM1P09493 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.42■□□□□ 0.22
TPM1P09493 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.42■□□□□ 0.22
TPM1P09493 AL138828.2-201ENST00000615812 383 ntBASIC16.42■□□□□ 0.22
TPM1P09493 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.42■□□□□ 0.22
TPM1P09493 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TPM1P09493 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TPM1P09493 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TPM1P09493 AL158070.2-201ENST00000623713 1621 ntBASIC16.41■□□□□ 0.22
TPM1P09493 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.41■□□□□ 0.22
TPM1P09493 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TPM1P09493 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.41■□□□□ 0.22
TPM1P09493 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.41■□□□□ 0.22
TPM1P09493 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.41■□□□□ 0.22
TPM1P09493 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms