Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 AC012508.2-201ENST00000567613 1472 ntBASIC11.54□□□□□ -0.56
CXCL1P09341 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC11.54□□□□□ -0.56
CXCL1P09341 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 INPP5J-208ENST00000412277 3512 ntTSL 2 BASIC11.54□□□□□ -0.56
CXCL1P09341 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC11.54□□□□□ -0.56
CXCL1P09341 PCDHB19P-202ENST00000625133 2914 ntBASIC11.54□□□□□ -0.56
CXCL1P09341 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC11.54□□□□□ -0.56
CXCL1P09341 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC11.54□□□□□ -0.56
CXCL1P09341 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 AKAP8P1-201ENST00000434743 1349 ntBASIC11.54□□□□□ -0.56
CXCL1P09341 BSG-215ENST00000618006 1329 ntTSL 2 BASIC11.54□□□□□ -0.56
CXCL1P09341 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC11.54□□□□□ -0.56
CXCL1P09341 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CXCL1P09341 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CXCL1P09341 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC11.53□□□□□ -0.56
CXCL1P09341 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 TK1-203ENST00000588734 1681 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 MKRN5P-201ENST00000445263 1467 ntBASIC11.53□□□□□ -0.56
CXCL1P09341 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC11.53□□□□□ -0.56
CXCL1P09341 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC11.53□□□□□ -0.56
CXCL1P09341 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC11.53□□□□□ -0.56
CXCL1P09341 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC11.53□□□□□ -0.56
CXCL1P09341 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC11.53□□□□□ -0.56
CXCL1P09341 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC11.53□□□□□ -0.56
CXCL1P09341 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC11.53□□□□□ -0.56
CXCL1P09341 AL773604.1-201ENST00000617417 272 ntBASIC11.53□□□□□ -0.56
CXCL1P09341 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 FOXO1B-201ENST00000504678 1527 ntBASIC11.53□□□□□ -0.56
CXCL1P09341 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
CXCL1P09341 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CXCL1P09341 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC11.53□□□□□ -0.56
CXCL1P09341 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms