Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 NCR3-202ENST00000376071 541 ntTSL 5 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 PFN2-206ENST00000461930 606 ntTSL 4 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 NAT9-211ENST00000580632 799 ntTSL 3 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.35■□□□□ 0.37
HLA-DOAP06340 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.35■□□□□ 0.37
HLA-DOAP06340 AC092299.1-201ENST00000632679 757 ntBASIC17.35■□□□□ 0.37
HLA-DOAP06340 AHCYP4-201ENST00000419201 1315 ntBASIC17.35■□□□□ 0.37
HLA-DOAP06340 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 AC126755.1-201ENST00000525846 6405 ntBASIC17.35■□□□□ 0.37
HLA-DOAP06340 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 AC023157.3-201ENST00000619086 2088 ntBASIC17.35■□□□□ 0.37
HLA-DOAP06340 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DOAP06340 MYO15B-237ENST00000642007 4893 ntBASIC17.35■□□□□ 0.37
HLA-DOAP06340 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 HINT2P1-201ENST00000419438 481 ntBASIC17.34■□□□□ 0.37
HLA-DOAP06340 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 EEF1DP6-201ENST00000449232 372 ntBASIC17.34■□□□□ 0.37
HLA-DOAP06340 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.34■□□□□ 0.37
HLA-DOAP06340 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 AC242376.1-201ENST00000559033 726 ntBASIC17.34■□□□□ 0.37
HLA-DOAP06340 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 MIR4754-201ENST00000582477 89 ntBASIC17.34■□□□□ 0.37
HLA-DOAP06340 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 DDX5-235ENST00000630471 473 ntTSL 4 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DOAP06340 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HLA-DOAP06340 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.33■□□□□ 0.37
HLA-DOAP06340 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.33■□□□□ 0.37
HLA-DOAP06340 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DOAP06340 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
HLA-DOAP06340 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
HLA-DOAP06340 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.33■□□□□ 0.37
HLA-DOAP06340 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DOAP06340 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DOAP06340 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DOAP06340 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DOAP06340 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms