Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 RHPN1-AS1-201ENST00000518049 1918 ntBASIC11.23□□□□□ -0.61
HLA-DQA1P01909 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 MAPK10-262ENST00000641051 5738 ntBASIC11.22□□□□□ -0.61
HLA-DQA1P01909 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 AL590627.1-203ENST00000421194 1026 ntBASIC11.22□□□□□ -0.61
HLA-DQA1P01909 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 AL513480.1-201ENST00000451731 511 ntBASIC11.22□□□□□ -0.61
HLA-DQA1P01909 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 CIPC-205ENST00000555437 566 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 Z83851.2-201ENST00000609564 659 ntBASIC11.22□□□□□ -0.61
HLA-DQA1P01909 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 ACACA-237ENST00000616317 9961 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 URGCP-201ENST00000336086 5658 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 RNF165-202ENST00000543885 4852 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
HLA-DQA1P01909 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 DDC-213ENST00000617822 1809 ntTSL 3 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 POM121L14P-201ENST00000406100 1558 ntBASIC11.21□□□□□ -0.61
HLA-DQA1P01909 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DQA1P01909 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 334.4 ms