Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
MBD4O95243 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 EIF4HP1-201ENST00000453115 687 ntBASIC17.6■□□□□ 0.41
MBD4O95243 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 AKR7A2P1-201ENST00000460134 915 ntBASIC17.6■□□□□ 0.41
MBD4O95243 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.6■□□□□ 0.41
MBD4O95243 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.6■□□□□ 0.41
MBD4O95243 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.6■□□□□ 0.41
MBD4O95243 AC009884.2-201ENST00000603110 324 ntBASIC17.6■□□□□ 0.41
MBD4O95243 AC090164.2-201ENST00000611487 516 ntBASIC17.6■□□□□ 0.41
MBD4O95243 AC138649.2-201ENST00000615886 705 ntBASIC17.6■□□□□ 0.41
MBD4O95243 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 AC138028.6-201ENST00000616106 1482 ntBASIC17.6■□□□□ 0.41
MBD4O95243 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC17.6■□□□□ 0.41
MBD4O95243 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.6■□□□□ 0.41
MBD4O95243 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.6■□□□□ 0.41
MBD4O95243 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 AL596257.1-201ENST00000641463 2694 ntBASIC17.6■□□□□ 0.41
MBD4O95243 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 AC007686.3-201ENST00000619017 3487 ntBASIC17.6■□□□□ 0.41
MBD4O95243 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MBD4O95243 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MBD4O95243 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
MBD4O95243 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MBD4O95243 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.59■□□□□ 0.41
MBD4O95243 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
MBD4O95243 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 HLA-J-204ENST00000495278 958 ntBASIC17.59■□□□□ 0.41
MBD4O95243 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.59■□□□□ 0.41
MBD4O95243 ACTG1P17-201ENST00000558391 1119 ntBASIC17.59■□□□□ 0.41
MBD4O95243 CSH2-206ENST00000560142 749 ntTSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.59■□□□□ 0.41
MBD4O95243 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 AC106881.1-201ENST00000605849 3329 ntBASIC17.59■□□□□ 0.41
MBD4O95243 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
MBD4O95243 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 INTS4P1-203ENST00000641008 3683 ntBASIC17.59■□□□□ 0.41
MBD4O95243 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MBD4O95243 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.59■□□□□ 0.41
MBD4O95243 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MBD4O95243 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MBD4O95243 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MBD4O95243 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.58■□□□□ 0.41
MBD4O95243 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
MBD4O95243 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MBD4O95243 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.58■□□□□ 0.41
MBD4O95243 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
MBD4O95243 NFIC-211ENST00000641145 8399 ntBASIC17.58■□□□□ 0.41
MBD4O95243 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MBD4O95243 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MBD4O95243 AC009093.10-201ENST00000641956 1442 ntBASIC17.58■□□□□ 0.41
MBD4O95243 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.58■□□□□ 0.41
MBD4O95243 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.58■□□□□ 0.41
MBD4O95243 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MBD4O95243 FAM90A7P-201ENST00000382628 1395 ntBASIC17.58■□□□□ 0.4
MBD4O95243 FAM90A23P-201ENST00000400136 1395 ntBASIC17.58■□□□□ 0.4
MBD4O95243 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.58■□□□□ 0.4
MBD4O95243 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MBD4O95243 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MBD4O95243 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
MBD4O95243 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MBD4O95243 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.58■□□□□ 0.4
MBD4O95243 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MBD4O95243 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms