Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.23□□□□□ -0.13
PDLIM1O00151 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.23□□□□□ -0.13
PDLIM1O00151 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
PDLIM1O00151 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM1O00151 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PDLIM1O00151 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PDLIM1O00151 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
PDLIM1O00151 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
PDLIM1O00151 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PDLIM1O00151 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PDLIM1O00151 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.22□□□□□ -0.13
PDLIM1O00151 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.22□□□□□ -0.13
PDLIM1O00151 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.22□□□□□ -0.13
PDLIM1O00151 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.22□□□□□ -0.13
PDLIM1O00151 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.22□□□□□ -0.13
PDLIM1O00151 AC092580.3-201ENST00000430932 139 ntBASIC14.22□□□□□ -0.13
PDLIM1O00151 AC055876.3-201ENST00000431496 288 ntBASIC14.22□□□□□ -0.13
PDLIM1O00151 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 HLA-V-204ENST00000476601 1289 ntBASIC14.22□□□□□ -0.13
PDLIM1O00151 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.22□□□□□ -0.13
PDLIM1O00151 AC069120.2-201ENST00000524091 540 ntBASIC14.22□□□□□ -0.13
PDLIM1O00151 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.22□□□□□ -0.13
PDLIM1O00151 AC005498.2-205ENST00000593218 784 ntBASIC14.22□□□□□ -0.13
PDLIM1O00151 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.22□□□□□ -0.13
PDLIM1O00151 AC026979.3-201ENST00000607315 403 ntBASIC14.22□□□□□ -0.13
PDLIM1O00151 AC138649.4-201ENST00000612222 287 ntBASIC14.22□□□□□ -0.13
PDLIM1O00151 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC14.22□□□□□ -0.13
PDLIM1O00151 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
PDLIM1O00151 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
PDLIM1O00151 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PDLIM1O00151 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.22□□□□□ -0.13
PDLIM1O00151 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM1O00151 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
PDLIM1O00151 AL357140.3-201ENST00000639753 1983 ntBASIC14.22□□□□□ -0.13
PDLIM1O00151 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
PDLIM1O00151 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
PDLIM1O00151 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC14.21□□□□□ -0.13
PDLIM1O00151 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
PDLIM1O00151 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
PDLIM1O00151 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
PDLIM1O00151 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC14.21□□□□□ -0.13
PDLIM1O00151 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.21□□□□□ -0.13
PDLIM1O00151 MIR943-201ENST00000401286 94 ntBASIC14.21□□□□□ -0.13
PDLIM1O00151 SPDYE17-201ENST00000412399 783 ntBASIC14.21□□□□□ -0.13
PDLIM1O00151 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.21□□□□□ -0.13
PDLIM1O00151 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.21□□□□□ -0.13
PDLIM1O00151 AC097493.3-201ENST00000509725 367 ntBASIC14.21□□□□□ -0.13
PDLIM1O00151 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.21□□□□□ -0.13
PDLIM1O00151 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.21□□□□□ -0.13
PDLIM1O00151 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.21□□□□□ -0.13
PDLIM1O00151 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
PDLIM1O00151 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.21□□□□□ -0.13
PDLIM1O00151 SPDYE12P-201ENST00000618416 771 ntBASIC14.21□□□□□ -0.13
PDLIM1O00151 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.21□□□□□ -0.13
PDLIM1O00151 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.21□□□□□ -0.13
PDLIM1O00151 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 AL354702.1-201ENST00000442006 1960 ntBASIC14.21□□□□□ -0.13
PDLIM1O00151 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM1O00151 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms