Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 AC089987.1-201ENST00000551654 2209 ntBASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 RPL37AP1-201ENST00000412502 279 ntBASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 AC112482.1-201ENST00000492080 688 ntBASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 AC074044.1-201ENST00000609673 707 ntBASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CHMP1AQ9HD42 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
CHMP1AQ9HD42 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
CHMP1AQ9HD42 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 AP001267.2-201ENST00000532619 2086 ntBASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 MST1P2-201ENST00000457982 2291 ntBASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 SYS1-203ENST00000414310 795 ntTSL 3 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.89□□□□□ -0.35
CHMP1AQ9HD42 SNHG9-202ENST00000564014 471 ntBASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms