Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 SALL4P5-201ENST00000419001 1760 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 ACTBP8-201ENST00000403258 1108 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AC007969.1-201ENST00000433675 447 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 EIF3FP3-201ENST00000434851 1086 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AC012441.1-201ENST00000446669 685 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 KRT17P7-201ENST00000451704 1104 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 GIMAP3P-201ENST00000495150 836 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 CR383656.12-201ENST00000549567 513 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AC015936.2-201ENST00000593177 259 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 KRT8P35-201ENST00000483942 1338 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 INE2-201ENST00000630399 1874 ntBASIC15.35■□□□□ 0.05
PCDH9Q9HC56 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PCDH9Q9HC56 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 MYADML-201ENST00000474610 2147 ntBASIC15.34■□□□□ 0.05
PCDH9Q9HC56 LRRC59-203ENST00000576448 1531 ntBASIC15.34■□□□□ 0.05
PCDH9Q9HC56 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.34■□□□□ 0.05
PCDH9Q9HC56 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PCDH9Q9HC56 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDH9Q9HC56 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.33■□□□□ 0.05
PCDH9Q9HC56 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms