Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC14.24□□□□□ -0.13
VPS13AQ96RL7 AL050341.2-201ENST00000567508 1541 ntBASIC14.24□□□□□ -0.13
VPS13AQ96RL7 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 ZNF436-AS1-201ENST00000335648 2547 ntBASIC14.23□□□□□ -0.13
VPS13AQ96RL7 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AC136604.1-202ENST00000425471 771 ntBASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 RN7SL530P-201ENST00000485097 298 ntBASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AC026412.1-206ENST00000502273 206 ntBASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AL356000.1-201ENST00000441073 1238 ntBASIC14.23□□□□□ -0.13
VPS13AQ96RL7 TMA16-204ENST00000508268 608 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13AQ96RL7 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 KRT8P6-201ENST00000399259 1207 ntBASIC14.22□□□□□ -0.13
VPS13AQ96RL7 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AL773545.2-201ENST00000442149 472 ntBASIC14.22□□□□□ -0.13
VPS13AQ96RL7 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 STK24P1-201ENST00000455035 1291 ntBASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 CASP3-205ENST00000517513 964 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 HNRNPA1P5-201ENST00000558213 966 ntBASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AC087072.1-201ENST00000603727 421 ntBASIC14.22□□□□□ -0.13
VPS13AQ96RL7 CSTP2-201ENST00000610599 398 ntBASIC14.22□□□□□ -0.13
VPS13AQ96RL7 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 HNRNPA1P2-207ENST00000432375 960 ntBASIC14.22□□□□□ -0.13
VPS13AQ96RL7 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms