Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 MST1L-201ENST00000442552 2185 ntBASIC17.36■□□□□ 0.37
TRIM47Q96LD4 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 RPL13AP19-201ENST00000434320 584 ntBASIC17.36■□□□□ 0.37
TRIM47Q96LD4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 AL353637.1-201ENST00000451571 732 ntBASIC17.36■□□□□ 0.37
TRIM47Q96LD4 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 AC135983.4-201ENST00000564116 1262 ntBASIC17.36■□□□□ 0.37
TRIM47Q96LD4 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 AC004466.1-201ENST00000599515 1080 ntBASIC17.36■□□□□ 0.37
TRIM47Q96LD4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 CLUHP2-201ENST00000426660 1303 ntBASIC17.36■□□□□ 0.37
TRIM47Q96LD4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM47Q96LD4 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 ISCA2P1-201ENST00000425548 448 ntBASIC17.35■□□□□ 0.37
TRIM47Q96LD4 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 AC242376.1-201ENST00000559033 726 ntBASIC17.35■□□□□ 0.37
TRIM47Q96LD4 MIR4683-201ENST00000579659 81 ntBASIC17.35■□□□□ 0.37
TRIM47Q96LD4 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 AC090164.2-201ENST00000611487 516 ntBASIC17.35■□□□□ 0.37
TRIM47Q96LD4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM47Q96LD4 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM47Q96LD4 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms